1. Papke E, Kennedy GE, Elliott E, Taylor A, Tolar BB, Ushijima B (Under Review 2024). Transmission Electron Microscopy of Coral Tissue. Current Protocols in Cell Biology.
2. Pavloudi C, Shlafstein M, De La Flor YT, Smith EM, Peñuela AC, Papke E, Oliver L, Slattery K, Lissner G, Coelho LC, Oline DK, Videau P, Strangman WK, Ushijima B, Saw JH (Under review 2024). Janthinobacterium aestuarii sp. nov., a novel violacein-producing bacterium isolated from the Tidal Basin in Washington DC, USA. Systematic and Applied Microbiology.
3.Thomas EM*, Smith EM*, Papke E*, Shlafstein MD, Grant-Beurmann S, Coelho L, Häse C, Oline D, Videau P, Saw J, Strangman W, Ushijima B (Under review 2024). Assessment of probiotic strains that protect Montipora capitata coral from infection by Vibrio coralliilyticus OCN008, and description of Pseudoalteromonas ardens sp. nov., Pseudoalteromonas obscura sp. nov., and Pseudoalteromonas umbrosa sp. nov. International Journal of Systematic and Evolutionary Microbiology.
4. Papke E, Carreiro A, Dennison C, Deutsch J, Isma LM, Rossin A, Baker SC, Brandt M, Garg N, Holstein DM, Traylor-Knowles N, Voss JD, Ushijima B (2024). Stony Coral Tissue Loss Disease: A Review of Emergence, Impacts, Etiology, Diagnostics, and Intervention. Frontiers in Marine Science. https://doi.org/10.3389/fmars.2023.1321271
5. Bain W, Ahn B, Peñaloza H, McElheny C, Tolman N, van der Geest R, Gonzalez-Ferrer S, Chen N, An X, Hosuru R, Tabary M, Papke E, Kohli N, Farooq N, Bachman W, Olonisakin TF, Xiong Z, Griffith MP, Sullivan M, Franks J, Mustapha MM, Lovleva A, Suber T, Shanks RQ, Ferreira VP, Stolz DB, Van Tyne D, Doi Y, Lee JS (2024). In vivo evolution of a Klebsiella pneumoniae capsule defect promotes complement-mediated opsono-phagocytosis and persistence during recurrent infection. Journal of Infectious Diseases.
6. Papke E, Wallace B, Hamlyn S, Nowicki R (2021). Differential effects of substrate type and genet of microfragments of Acropora palmata. Frontiers in Marine Science 8, 394. https://doi.org/10.3389/fmars.2021.623963
7. Bain W, Li H, van der Geest R, Moore SR, Olonisakin TF, Ahn B, Papke E, Moghbeli K, DeSensi R, Rapport S, Saul M, Hulver M, Xiong Z, Mallampalli RM, Ray P, Morris A, Ma L, Doi Y, Zhang Y, Kitsios GD, Kulkarni HS, McVerry BJ, Ferreira VP, Nouraie M, Lee JS (2020). Increased alternative complement pathway function and improved survival during critical illness. American Journal of Respiratory and Critical Care Medicine. https://doi.org/10.1164/rccm.201910-2083OC
8. Vidyarathna NK, Papke E, Coyne KJ, Cohen JH, Warner ME (2020). Functional trait thermal acclimation differs across three species of mid-Atlantic harmful algae. Harmful Algae. https://doi.org/10.1016/j.hal.2020.101804
*Authors share first authorship
2. Pavloudi C, Shlafstein M, De La Flor YT, Smith EM, Peñuela AC, Papke E, Oliver L, Slattery K, Lissner G, Coelho LC, Oline DK, Videau P, Strangman WK, Ushijima B, Saw JH (Under review 2024). Janthinobacterium aestuarii sp. nov., a novel violacein-producing bacterium isolated from the Tidal Basin in Washington DC, USA. Systematic and Applied Microbiology.
3.Thomas EM*, Smith EM*, Papke E*, Shlafstein MD, Grant-Beurmann S, Coelho L, Häse C, Oline D, Videau P, Saw J, Strangman W, Ushijima B (Under review 2024). Assessment of probiotic strains that protect Montipora capitata coral from infection by Vibrio coralliilyticus OCN008, and description of Pseudoalteromonas ardens sp. nov., Pseudoalteromonas obscura sp. nov., and Pseudoalteromonas umbrosa sp. nov. International Journal of Systematic and Evolutionary Microbiology.
4. Papke E, Carreiro A, Dennison C, Deutsch J, Isma LM, Rossin A, Baker SC, Brandt M, Garg N, Holstein DM, Traylor-Knowles N, Voss JD, Ushijima B (2024). Stony Coral Tissue Loss Disease: A Review of Emergence, Impacts, Etiology, Diagnostics, and Intervention. Frontiers in Marine Science. https://doi.org/10.3389/fmars.2023.1321271
5. Bain W, Ahn B, Peñaloza H, McElheny C, Tolman N, van der Geest R, Gonzalez-Ferrer S, Chen N, An X, Hosuru R, Tabary M, Papke E, Kohli N, Farooq N, Bachman W, Olonisakin TF, Xiong Z, Griffith MP, Sullivan M, Franks J, Mustapha MM, Lovleva A, Suber T, Shanks RQ, Ferreira VP, Stolz DB, Van Tyne D, Doi Y, Lee JS (2024). In vivo evolution of a Klebsiella pneumoniae capsule defect promotes complement-mediated opsono-phagocytosis and persistence during recurrent infection. Journal of Infectious Diseases.
6. Papke E, Wallace B, Hamlyn S, Nowicki R (2021). Differential effects of substrate type and genet of microfragments of Acropora palmata. Frontiers in Marine Science 8, 394. https://doi.org/10.3389/fmars.2021.623963
7. Bain W, Li H, van der Geest R, Moore SR, Olonisakin TF, Ahn B, Papke E, Moghbeli K, DeSensi R, Rapport S, Saul M, Hulver M, Xiong Z, Mallampalli RM, Ray P, Morris A, Ma L, Doi Y, Zhang Y, Kitsios GD, Kulkarni HS, McVerry BJ, Ferreira VP, Nouraie M, Lee JS (2020). Increased alternative complement pathway function and improved survival during critical illness. American Journal of Respiratory and Critical Care Medicine. https://doi.org/10.1164/rccm.201910-2083OC
8. Vidyarathna NK, Papke E, Coyne KJ, Cohen JH, Warner ME (2020). Functional trait thermal acclimation differs across three species of mid-Atlantic harmful algae. Harmful Algae. https://doi.org/10.1016/j.hal.2020.101804
*Authors share first authorship